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ANTUNES, D.A., RIGO, M.M., CIBULSKI, S.P., FULBER, C.C., SINIGAGLIA, M., CHIES, J.A.B., VIEIRA, G.F.; Use of Molecular Dynamics for In Silico Assessment of Cross-Reactivity; In: V Escola de Modelagem Molecular em Sistemas Biológicos. Laboratório Nacional de Computação Científica (LNCC), 2010, Petrópolis

ANTUNES, D.A.; RIGO, M.M.; CIBULSKI, S.P.; SINIGAGLIA, M.; CHIES, J.A.B. VIEIRA, G.F.; Structural in silico analysis of cross-genotype-reactivity among naturally occurring HCV NS3-1073-variants; in the context of HLA-A*02:01 allele. In: XXXV Congress of the Brazilian Society for Immunology, 2010, Porto Alegre

ANTUNES, D.A.; VIEIRA, G.F.; RIGO, M.M.; CIBULSKI, S.P.; SINIGAGLIA, M.; CHIES, J.A.B.; Structural allele-specific patterns adopted by epitopes; in the MHC-I cleft and reconstruction of MHC:peptide complexes to cross-reactivity assessment. PLos ONE , v. 5(4): e10353, 2010

CARVALHO, MARCOS OLIVEIRA DE; Evolutive Patterns of Transposable Elements in Drosophila Genomes; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology, 2010

CARVALHO, MARCOS OLIVEIRA DE; LORETO, ELGION LUCIO DA SILVA; Análise filogenômica de elementos transponíveis em 12 genomas de Drosophila; Universidade Federal do Rio Grande do Sul, Programa de Pós-Graduação em Genética e Biologia Molecular; Universidade Federal de Santa Maria, Centro de Ciências Naturais e Exatas, Departamento de Biologia

COELHO-JR, O. ; ORTEGA, J. M.; Secondary-structure overlapping group (SOG) combines homologous groups with same ontology; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X-meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

DA SILVA, ROBERTO; KELLERMANN, GUSTAVO ADOLFO; LAMB, LUIS DA CUNHA; Statistical fluctuations in population bargaining in the ultimatum game: Staticand evolutionary aspects; Journal of Theoretical Biology, v. 258, p. 208-218, 2009

DA SILVA, ROBERTO; WIRTH, GILSON INACIO; RandomTelegraph Signals with time dependent capture and emission probabilities: analytical and numerical results; Applied Mathematical Modelling, v. 34, p. 968-977, 2010

DOLVITSCH, JULIANE; RUSCHEL, FERNANDA; SILVA FILHO, LUIZ CARLOS; SCHEFFER, PEDRO; Avaliação da Utilização de Métodos Computacionais na Reconstituição de Incêndios em Edificações: Aplicação ao Caso do Shopping Total em Porto Alegre - RS; Congresso Ibero-Latino-Americano em Segurança Contra Incêndio - CILASCI 2010

FERNANDES, G. D. R; ORTEGA, J. M.; UEKO update: 2. 4 million sequences from 25 thousand organisms; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X-meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

FREIRE, JOANA G. ; BRISON, OWEN J. ; GALLAS, JASONA. C.; Completesets of initial vectors for pattern growth with elementary cellular automata; Computer Physics Communications 181, 750-755, 2010

FREIRE, JOANA G. ; GALLAS, JASON A. C.; Non-Shilnikov cascades of spikes and hubs in a semiconductor laser withoptoelectronic feedback; Physical Review E 82, 037202, 2010

FULBER, C.C., ANTUNES D.A., RIGO, M.M., CHIES J.A.B., SINIGAGLIA, M., VIEIRA G.F.; Desenvolvimento de métodos computacionais para automatização do processo de modelagem por homologia e padronização da técnica de modelagem de alelos de MHC humanos; In: XXI Salão de Iniciação Científica da UFRGS, 2010, Porto Alegre

FULBER, C.C., CIBULSKI, S.P, ANTUNES D.A., RIGO, M.M., CHIES J.A.B., SINIGAGLIA, M., VIEIRA G.F.; Reconstruction of MHC alleles by cross modeling and structural assessment; In: International Society for Computational Biology, 2010, Montevidéo. ISCB Latin America 2010

GALLAS, JASON A. C.; The structure of infinite periodic and chaotic hub cascades in phasediagrams of simple autonomous flows; International Journal of Bifurcation and Chaos 20, 197-211, 2010

KOVANIS, VASSILIOS; GAVRIELIDES, ATHANASIOS; GALLAS, JASON A. C.; Labyrinth bifurcations in optically injected diode lasers; European Physics Journal D 58, 181-186, 2010

MACIEL, T. E. F. ; SOUSA, R. F. D. ; FERNANDES, G. D. R. ; ORTEGA, J. M. ; FIETTO, J. L. R.; Mining the Leishmania genome for new targets to biotechnological applications; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X-meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

MULLER, ANA PAULA; GALLAS, JASON A. C.; How community size affects survival chances in cyclic competition gamesthat microorganisms play; Physical Review E 82, 052901, 2010

MUÑOZ, F. ; PEREZ, M. ; MARTINEZ, G. ; MEJIA-LOPEZ, J.; Magnetic and electronic properties of small CunCom bimetallic clusters; Physical Review B

NASCIMENTO MELKE A. , JASON A. C. GALLAS AND HAMILTON VARELA; Self-organized distribution of periodicity and chaos in an electrochemicaloscillator; Physical Chemistry Chemical Physics 13, 2010

OSTHOFF, C. ; SCHEPKE, C. ; PANETTA, J. ; GRUNMANN, P. J. ; DIAS, P. L. S. ; KASSICK, R. ; BOITO, F. ; NAVAUX, P. O.; Improvingcore selection on a multicore cluster to increase the scalability ofan atmospheric model simulation; CINEMAC; Buenos Aires; 15/11/2010; 18/11/2010; Publicação: Anais do XXIXCongresso Nacional de Matemática Aplicada e Computacional - CNMAC; Vol: XXIX; Pág: 3143-3153

OSTHOFF, C. ; SCHEPKE, C. ; PANETTA, J. ; GRUNMANN, P. J. ; MAILLARD, N. B. ; NAVAUX, P. O. ; DIAS, P. L. S. ; LOPES, P. P.; I/O Performance Evaluation on Multicore Clusters with Atmospheric Model Environment; LNCC; 27/10/2010; 30/10/2010; Publicação: 1st Workshop onApplications for Multi and Many Core Architectures

QUADROS, L. C. D. , MELO, H. V. , ORTEGA, J. M.; Origin of human chromosomal domains; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X - meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

RAMIREZ-AVILA, GONZALO M. ; GALLAS, JASON A. C.; Auto similaridadesen el espacio de parâmetros del circuito de Chua con no linealidades discretas y continuas; Revista Boliviana de Fisica 16, 2010

RAMIREZ-AVILA, GONZALO M. ; GALLAS, JASON A. C.; How similar is the performance of the cubic and the piece wise-linear circuits of Chua?; Physics Letters A 375, 143-148, 2010

RECH, C. ; ZANCANARO, F. V. JR ; WILDNER, F. D. ; OLIVEIRA, A A M JR; VIELMO, H. A.; Experimentaland Numerical Analysis of Gas Motion in a Standard Cooperative FuelResearch Engine; In: 13th Brazilian Congress of Thermal Sciences and Engineering, 2010, 2010, Uberlândia, MG. Proceedings of 13th ENCIT. Rio deJaneiro, RJ : ABCM, 2010

RIBEIRO, C. ; GUEDES, R. L. M. ; RIBEIRO, H. A. L. ; COELHO-JUNIOR, O. ; ORTEGA, J. M.; Designof a quintillion of genes that codify for syntethic mini-antibodies(SCFV); 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X-meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

RIBEIRO, H. A. L. ; ORTEGA, J. M.; A simple procedure dor annotation of uncharacterized proteins; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X-meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

RIGO, M.M., ANTUNES D.A., CIBULSKI, S.P, FULBER, C.C., SINIGAGLIA, M., CHIES J.A.B., VIEIRA G.F.; Peptide:MHC complexes reconstrution to infer binding affinity for the HLA-A*0201 allele; In: International Society for Computational Biology, 2010, Montevideo. ISCB Latin America 2010

RIGO, M.M., ANTUNES, D.A., FULBER, C.C., CHIES, J.A.B., SINIGAGLIA, M., VIEIRA, G.F.; In Silico Analysis of Good and Bad HLA Ligands: a Molecular Dynamics Approach; In: 4th Vaccine and ISV Annual Global Congress, 2010, Vienna

RIGO, M.M., ANTUNES, D.A., FULBER, C.C., CHIES, J.A.B., SINIGAGLIA, M., VIEIRA, G.F.; Inference of Good and Bad HLA Ligands Through Molecular Dynamics Approach; In: V Escola de Modelagem Molecular em Sistemas Biológicos. Laboratório Nacional de Computação Científica (LNCC), 2010, Petrópolis

RIGO, M.M., ANTUNES, D.A., FULBER, C.C., CHIES, J.A.B., SINIGAGLIA, M., VIEIRA, G.F.; Use of Molecular Dynamics and Immunoinformatic Tools to Infer Good and Bad HLA Ligands; In: XXXV Congress of the Brazilian Society for Immunology, 2010, Porto Alegre

RIGO, M.M.; ANTUNES, D.A.; SINIGAGLIA, M.; FULBER, C.C.; CHIES, J.A.B.; VIEIRA, G.F.; Molecular aspects involved in the immunogenicity against viral epitopes: an immunoinformatic perspective; In: Christian J. Villanueva. (Org.). Immunogenicity. Hauppauge: Nova Science, 2010

SINIGAGLIA, M., CIBULSKI, S.P., ANTUNES, D.A., RIGO, M.M., FULBER, C.C., CHIES, J.A.B., VIEIRA, G.F.; Structure modeling of rabies virus glycoprotein; In: V Escola de Modelagem Molecular em Sistemas Biológicos. Laboratório Nacional de Computação Científica (LNCC), 2010, Petrópolis

STUSSI, F. ; BARBOSA-SILVA, A. ; DONNARD, E. R. ; FERNANDES, G. R. ; GUEDES, R. L. M. ; ORTEGA, J. M.; Enriching KEGG pathway with Pescador text mining tool - colorectal cancerpathway as a model; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X-meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

VELLOSO, H. ; ORTEGA J. M.; Originof human pathways; 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology - X-meeting 2010, OuroPreto, 15 a 18 de Novembro de 2010

VIEIRA, G.F., ANTUNES, D.A., RIGO, M.M., CIBULSKI, S.P., FULBER, C.C., SINIGAGLIA, M., CHIES, J.A.B.; In Silico Assessment of Structural Basis for Cross-Reactivity Among HCV Genotype Variants; In: 4th Vaccine and ISV Annual Global Congress, 2010, Vienna

VIEIRA, G.F.; ANTUNES, D.A.; RIGO, M.M.; CIBULSKI, S.P.; FULLBER, C.C.; SINIGAGLIA, M.; CHIES, J.A.B.; In Silico Assessment Of Structural Influence Over The Immunogenicity In Alanine Exchanged Variants Of HCV NS31073 Peptide; Reunião Anual da Sociedade Brasileira de Bioquímica, SBBq. Foz do Iguaçu, 2010, Brasil

ZANCANARO, F V JR.; Simulação Numérica do Escoamentos Turbulento em Motores de Combustão Interna; Dissertação de Mestrado, PROMEC/UFRGS, 2010

ZANCANARO, F. V. JR ; FALCAO, C E G ; RECH, C. ; ANDRADE, G S ; VIELMO, H. A.; Comparison Between Two Wall Treatments in the Three-Dimensional Modeling of anInternal Combustion Engine; In: 7th Spring School on Transition and Turbulence, 2010, 2010, Ilha Solteira, SP. Proceedingsof the EPTT. Rio de Janeiro, RJ : ABCM, 2010

ZANCANARO, F. V. JR ; VIELMO, H. A.; Assessmentof the Time Step in the Modeling of Cold Flow in a Motored Diesel Engine; In: Congresso 2010 SAE Brasil, 2010, São Paulo, SP. Proceedings ofthe 2010 SAE Brasil Congress, 2010

ZANCANARO, F. V. JR ; VIELMO, H. A.; IntakeFlow and Time Step Analysis in the Modeling of a Direct InjectionDiesel Engine; In: 13th Brazilian Congress of Thermal Sciences and Engineering, 2010, 2010, Uberlândia, MG. Proceedingsof 13th ENCIT. Rio de Janeiro, RJ : ABCM, 2010

ZANCANARO, F. V. JR, VIELMO, H. A.; Numerical Analysis of the Fluid Flow in a High Swirled Diesel Engine; In: 7th International Conference on Heat Transfer, Fluid Mechanicsand Thermodynamics, 2010, Antalya, Turquia. Proceedings of the HEFAT, 2010. v. 1